高级检索
当前位置: 首页 > 详情页

Inference of pan-cancer related genes by orthologs matching based on enhanced LSTM model

文献详情

资源类型:
WOS体系:
Pubmed体系:

收录情况: ◇ SCIE

单位: [1]Huazhong Univ Sci & Technol,Tongji Hosp,Tongji Med Coll,Inst Hepatopancreato Biliary Surg,Dept Surg,Hepat,Wuhan,Peoples R China [2]City Univ Hong Kong, Dept Elect Engn, Kowloon, Hong Kong, Peoples R China [3]China Univ Geosci, Sch Automat, Wuhan, Peoples R China [4]Hubei Key Lab Adv Control & Intelligent Automat, Wuhan, Peoples R China [5]Engn Res Ctr Intelligent Technol Geoexplorat, Wuhan, Peoples R China [6]China Univ Geosci, Sch Math & Phys, Wuhan, Peoples R China [7]Key Lab Computat Neurosci & Brain Inspired Intell, Shanghai, Peoples R China
出处:
ISSN:

关键词: microbe-disease orthologs essential proteins deep learning BiLSTM model

摘要:
Many disease-related genes have been found to be associated with cancer diagnosis, which is useful for understanding the pathophysiology of cancer, generating targeted drugs, and developing new diagnostic and treatment techniques. With the development of the pan-cancer project and the ongoing expansion of sequencing technology, many scientists are focusing on mining common genes from The Cancer Genome Atlas (TCGA) across various cancer types. In this study, we attempted to infer pan-cancer associated genes by examining the microbial model organism Saccharomyces Cerevisiae (Yeast) by homology matching, which was motivated by the benefits of reverse genetics. First, a background network of protein-protein interactions and a pathogenic gene set involving several cancer types in humans and yeast were created. The homology between the human gene and yeast gene was then discovered by homology matching, and its interaction sub-network was obtained. This was undertaken following the principle that the homologous genes of the common ancestor may have similarities in expression. Then, using bidirectional long short-term memory (BiLSTM) in combination with adaptive integration of heterogeneous information, we further explored the topological characteristics of the yeast protein interaction network and presented a node representation score to evaluate the node ability in graphs. Finally, homologous mapping for human genes matched the important genes identified by ensemble classifiers for yeast, which may be thought of as genes connected to all types of cancer. One way to assess the performance of the BiLSTM model is through experiments on the database. On the other hand, enrichment analysis, survival analysis, and other outcomes can be used to confirm the biological importance of the prediction results. You may access the whole experimental protocols and programs at .

基金:
语种:
被引次数:
WOS:
PubmedID:
中科院(CAS)分区:
出版当年[2021]版:
大类 | 2 区 生物学
小类 | 2 区 微生物学
最新[2025]版:
大类 | 2 区 生物学
小类 | 3 区 微生物学
JCR分区:
出版当年[2020]版:
Q1 MICROBIOLOGY
最新[2023]版:
Q2 MICROBIOLOGY

影响因子: 最新[2023版] 最新五年平均 出版当年[2020版] 出版当年五年平均 出版前一年[2019版] 出版后一年[2021版]

第一作者:
第一作者单位: [1]Huazhong Univ Sci & Technol,Tongji Hosp,Tongji Med Coll,Inst Hepatopancreato Biliary Surg,Dept Surg,Hepat,Wuhan,Peoples R China
通讯作者:
通讯机构: [3]China Univ Geosci, Sch Automat, Wuhan, Peoples R China [4]Hubei Key Lab Adv Control & Intelligent Automat, Wuhan, Peoples R China [5]Engn Res Ctr Intelligent Technol Geoexplorat, Wuhan, Peoples R China [7]Key Lab Computat Neurosci & Brain Inspired Intell, Shanghai, Peoples R China
推荐引用方式(GB/T 7714):
APA:
MLA:

资源点击量:590 今日访问量:1 总访问量:442 更新日期:2025-06-01 建议使用谷歌、火狐浏览器 常见问题

版权所有:重庆聚合科技有限公司 渝ICP备12007440号-3 地址:重庆市两江新区泰山大道西段8号坤恩国际商务中心16层(401121)