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A Novel Signature Constructed by Immune-Related LncRNA Predicts the Immune Landscape of Colorectal Cancer

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单位: [1]Huazhong Univ Sci & Technol, Dept Gastroenterol, Inst Liver & Gastrointestinal Dis, Tongji Hosp,Tongji Med Coll, Wuhan, Peoples R China [2]Huazhong Univ Sci & Technol, Tongji Hosp, Tongii Med Coll, Hepat Surg Ctr, Wuhan, Peoples R China [3]Huazhong Univ Sci & Technol, Hubei Key Lab Hepatopancreatobiliary Dis, Tongji Hosp, Tongji Med Coll, Wuhan, Peoples R China
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关键词: colorectal cancer immune-related lncRNA immunotherapy signature TCGA

摘要:
Colorectal cancer (CRC) has the characteristics of high morbidity and mortality. LncRNA not only participates in the progression of CRC through genes and transcription levels, but also regulates the tumor microenvironment and leads to the malignant phenotype of tumors. Therefore, we identified immune-related LncRNAs for the construction of clinical prognostic model. We searched The Cancer Genome Atlas (TCGA) database for original data. Then we identified differentially expressed irlncRNA (DEirlncRNA), which was paired and verified subsequently. Next, univariate analysis, Lasso and Cox regression analysis were performed on the DEirlncRNA pair. The ROC curve of the signature was drawn, and the optimal cut-off value was found. Then the cohort was divided into a high-risk and a low-risk group. Finally, we re-evaluated the signature from different perspectives. A total of 16 pairs of DEirlncRNA were included in the construction of the model. After regrouping according to the cut-off value of 1.275, the high-risk group showed adverse survival outcomes, progressive clinicopathological features, specific immune cell infiltration status, and high sensitivity to some chemotherapy drugs. In conclusion, we constructed a signature composed of immune-related LncRNA pair with no requirement of the specific expression level of genes, which shows promising clinical predictive value in CRC patients.

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出版当年[2020]版:
大类 | 3 区 生物
小类 | 3 区 遗传学
最新[2025]版:
大类 | 3 区 生物学
小类 | 3 区 遗传学
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出版当年[2019]版:
Q2 GENETICS & HEREDITY
最新[2023]版:
Q2 GENETICS & HEREDITY

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第一作者单位: [1]Huazhong Univ Sci & Technol, Dept Gastroenterol, Inst Liver & Gastrointestinal Dis, Tongji Hosp,Tongji Med Coll, Wuhan, Peoples R China [3]Huazhong Univ Sci & Technol, Hubei Key Lab Hepatopancreatobiliary Dis, Tongji Hosp, Tongji Med Coll, Wuhan, Peoples R China
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通讯机构: [1]Huazhong Univ Sci & Technol, Dept Gastroenterol, Inst Liver & Gastrointestinal Dis, Tongji Hosp,Tongji Med Coll, Wuhan, Peoples R China [2]Huazhong Univ Sci & Technol, Tongji Hosp, Tongii Med Coll, Hepat Surg Ctr, Wuhan, Peoples R China [3]Huazhong Univ Sci & Technol, Hubei Key Lab Hepatopancreatobiliary Dis, Tongji Hosp, Tongji Med Coll, Wuhan, Peoples R China
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