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Identification of potential crucial gene network related to seasonal allergic rhinitis using microarray data

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单位: [1]Nanjing Univ Chinese Med, Dept Otolaryngol, Affiliated Hosp, Nanjing 210029, Jiangsu, Peoples R China [2]Second Mil Med Univ, Changzheng Hosp, Dept Plast Surg, 415 Fengyang Rd, Shanghai 200003, Peoples R China [3]Huazhong Univ Sci & Technol, Tongji Hosp, Dept Allergy, Tongji Med Coll, 1095 Jiefang Dadao, Wuhan 430030, Hubei, Peoples R China [4]Nanjing Univ Chinese Med, Key Lab Acupuncture & Med Res, Minist Educ, 138 Xianlin Ave, Nanjing 210023, Jiangsu, Peoples R China
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关键词: Seasonal allergic rhinitis Microarray Differentially expressed gene Pathway Network

摘要:
The aim of this study was to reveal a potential key gene network associated with seasonal allergic rhinitis (SAR). The microarray data GSE50101 downloaded from Gene Expression Omnibus were used to screen differentially expressed genes (DEGs) between SAR patients and healthy controls. Then, functional enrichment analysis was conducted using Database for Annotation, Visualization, and Integrated Discovery. Afterwards, the protein-protein interactions (PPIs) of DEGs were obtained from STRING, and the PPI network was constructed. In addition, the PPI network module was analyzed. In total, 98 up-regulated and 63 down-regulated DEGs were identified from the SAR samples, comparing the healthy controls. The up-regulated DEGs were mainly enriched in the Gene Ontology terms about cell death (e.g., DUSP1 and JUN) and pathways related to immune (e.g., FOS and JUN). The down-regulated DEGs were mainly enriched in regulation of transcription (e.g., CEBPD and SCML1). In the PPI network, a set of genes was predicted to interact with each other, such as FOS, JUN, and CEBPD. Furthermore, genes in the network module (e.g., FOS, JUN and CEBPD) was mainly enriched in regulation of transcription, and pathways about immune, such as mitogen-activated protein kinase signaling pathway, B cell receptor signaling pathway, and toll-like receptor signaling pathway. Several genes related to immunity and regulation of transcription, such as FOS, JUN, and CEBPD, may play crucial roles during the process of SAR through the interactions with each other.

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出版当年[2016]版:
大类 | 4 区 医学
小类 | 3 区 耳鼻喉科学
最新[2025]版:
大类 | 3 区 医学
小类 | 3 区 耳鼻喉科学
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出版当年[2015]版:
Q2 OTORHINOLARYNGOLOGY
最新[2023]版:
Q2 OTORHINOLARYNGOLOGY

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第一作者单位: [1]Nanjing Univ Chinese Med, Dept Otolaryngol, Affiliated Hosp, Nanjing 210029, Jiangsu, Peoples R China
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