Machine learning-based tumor-infiltrating immune cell-associated lncRNAs for predicting prognosis and immunotherapy response in patients with glioblastoma
Long noncoding ribonucleic acids (RNAs; lncRNAs) have been associated with cancer immunity regulation. However, the roles of immune cell-specific lncRNAs in glioblastoma (GBM) remain largely unknown. In this study, a novel computational framework was constructed to screen the tumor-infiltrating immune cell-associated lncRNAs (TIIClnc) for developing TIIClnc signature by integratively analyzing the transcriptome data of purified immune cells, GBM cell lines and bulk GBM tissues using six machine learning algorithms. As a result, TIIClnc signature could distinguish survival outcomes of GBM patients across four independent datasets, including the Xiangya in-house dataset, and more importantly, showed superior performance than 95 previously established signatures in gliomas. TIIClnc signature was revealed to be an indicator of the infiltration level of immune cells and predicted the response outcomes of immunotherapy. The positive correlation between TIIClnc signature and CD8, PD-1 and PD-L1 was verified in the Xiangya in-house dataset. As a newly demonstrated predictive biomarker, the TIIClnc signature enabled a more precise selection of the GBM population who would benefit from immunotherapy and should be validated and applied in the near future.
基金:
Hunan Provincial Natural Science Foundation of China [2022JJ20095]; Hunan Provincial Health Committee Foundation of China [202204044869]
语种:
外文
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中科院(CAS)分区:
出版当年[2021]版:
大类|2 区生物学
小类|2 区生化研究方法2 区数学与计算生物学
最新[2025]版:
大类|2 区生物学
小类|1 区数学与计算生物学2 区生化研究方法
JCR分区:
出版当年[2020]版:
Q1BIOCHEMICAL RESEARCH METHODSQ1MATHEMATICAL & COMPUTATIONAL BIOLOGY
最新[2023]版:
Q1BIOCHEMICAL RESEARCH METHODSQ1MATHEMATICAL & COMPUTATIONAL BIOLOGY
第一作者单位:[1]Xiangya Hosp, Dept Neurosurg, Changsha, Peoples R China[2]Chongqing Med Univ, Affiliated Hosp 6, Affiliated Hosp 2, Dept Neurosurg, Chongqing, Peoples R China
通讯作者:
通讯机构:[1]Xiangya Hosp, Dept Neurosurg, Changsha, Peoples R China[*1]Ctr South Univ, Xiangya Hosp, Dept Neurosurg, Changsha 410008, Hunan, Peoples R China
推荐引用方式(GB/T 7714):
Zhang Hao,Zhang Nan,Wu Wantao,et al.Machine learning-based tumor-infiltrating immune cell-associated lncRNAs for predicting prognosis and immunotherapy response in patients with glioblastoma[J].BRIEFINGS IN BIOINFORMATICS.2022,23(6):doi:10.1093/bib/bbac386.
APA:
Zhang, Hao,Zhang, Nan,Wu, Wantao,Zhou, Ran,Li, Shuyu...&Cheng, Quan.(2022).Machine learning-based tumor-infiltrating immune cell-associated lncRNAs for predicting prognosis and immunotherapy response in patients with glioblastoma.BRIEFINGS IN BIOINFORMATICS,23,(6)
MLA:
Zhang, Hao,et al."Machine learning-based tumor-infiltrating immune cell-associated lncRNAs for predicting prognosis and immunotherapy response in patients with glioblastoma".BRIEFINGS IN BIOINFORMATICS 23..6(2022)